NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181365_1028917

Scaffold Ga0181365_1028917


Overview

Basic Information
Taxon OID3300017736 Open in IMG/M
Scaffold IDGa0181365_1028917 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1398
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)108
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008495Metagenome / Metatranscriptome332N
F020694Metagenome / Metatranscriptome222N

Sequences

Protein IDFamilyRBSSequence
Ga0181365_10289172F020694N/AMLDIFTSDLAAMLDELPVVVTFGDATFVANRTTYRRDNSLADGGFMNSASMTITALYSAVVQTISLGDVLVIGGTRLRVTSAELSQDAVSVDFSLEDINK
Ga0181365_10289173F008495N/AIINLQIWPDLHEDFCASPLGWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELKSWVLCFPTGYSQDKKIEPRDVMAVAHHVANGRPVLCAGKAAHGMAEFDSIEYMCAYIRDANEVVTINTSTSILASALRKSWVHISDSPKHDFTHPNQRRIERKF
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