NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181365_1047340

Scaffold Ga0181365_1047340


Overview

Basic Information
Taxon OID3300017736 Open in IMG/M
Scaffold IDGa0181365_1047340 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1077
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)108
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F001897Metagenome / Metatranscriptome620Y
F009883Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0181365_10473401F009883N/AAVPRIGSNKMNEASIVIAMIIAGVLWAVMAYSVGFKEGERQGYTRGRAVSRHISQLDKAA
Ga0181365_10473402F001897AGGCGGMAFMDNYEGNKERTDRWLATFPQGRLEAHIIEFNAEKGYVLVQAKAFRNQTETEPAGIDYAYGYLAAYPDKMKRWMVEDSCTSALMRVMALVMGGAEKATHEVMASIKAPAADYDYWTTKHGDVPSYATAVEAEMAGIPSFGSSENKQFMAEDLPSCFHGVMRWNESKPDAIKAWGGYFCSEKVKEKQCKPIWYVMTSNGWKPQI
Ga0181365_10473403F000403GGAMSDLIEIIYPQKMMAKLMCNGVVVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQENIIWFCGECR
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Institute for Fundamental Biomedical Research
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