NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181433_1041404

Scaffold Ga0181433_1041404


Overview

Basic Information
Taxon OID3300017739 Open in IMG/M
Scaffold IDGa0181433_1041404 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1183
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003751Metagenome / Metatranscriptome470Y
F041812Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0181433_10414041F003751AGGAGGMASYTAEKGAILQPGNQINRLSSYNTEGVFGWPGFELYEMVGYVKVSNLTADKANNKSFNLTVPSPDRRPDDRVRDDRTSLVVQADADRPAYIYSASISIGQDIPSAGEPSYPATPLTADIDGTNTEILLFGPDNSGSPFGVPATQANGLAAATAVTTAFSSGTIAQGESDVSVAEAPFWTAVTTSGIDDQDAANAMMFRVTADTTFKVYNVNAVTSTSVDGDGVFISSDDKDAGKAAYIICRVNYLRPAAATSFMDIIGSLDFASQVGGSDS
Ga0181433_10414042F041812N/AMLYQNRVTGGLVEVVSQHGEGILMCLDANEEVFYINEDDLVPHLDATVEQERNEVRLTENLKAEGAKPA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.