NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181433_1060838

Scaffold Ga0181433_1060838


Overview

Basic Information
Taxon OID3300017739 Open in IMG/M
Scaffold IDGa0181433_1060838 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)950
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042011Metagenome159Y
F057750Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0181433_10608381F042011N/AMIALIGMVVSLTISIAIGKSSVPEEAIPPTTYIWTPTPLEQRKMDSLYSIDAATKADMDSIKTMIDAILIKLD
Ga0181433_10608382F057750N/AMTKENYLFQGTREKAVREAQAVLDFMVPGKVRVYCEWCEEANAWYMVGAYQSYLNYAGKPKAVVSDKREKMDRYYDVSVFTHFFKQRTAYMNANYYWQIQARENNIHPATVKEGLRSKKRTTSDM

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