Scaffold Ga0181418

Basic Information
Taxon OID	3300017740 Open in IMG/M
Scaffold ID	Ga0181418_1007680 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3007
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3007

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F081776	Metagenome	114	N
F082527	Metagenome	113	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181418_10076801	F082527	AGGA	MTTLTTQLEALEKGGFSSEEINTWKQDKVLTLENAGFESDEILAEFGYEAIDKGPIKKIWENIITLGKEEKQTTYEKLLEVEKNEPDNTSLKEKLVGEVFEVEKYWDRGFNMGIIDLIQNYHQLPGNDGTGLPDGYVLEPFNDTGIVERNIQNLGVITKDLPVYLTGALLTNLLTFGRAGKTGTAAGTGFFAGSIRETYLNMLQEGKVHSWSEFWDIYTKEGVKAGGKEAIQLASAFKLGSFGKNWLSKLALRVTGFEGSGAIIEQEL
Ga0181418_10076802	F081776	AGG	MPKIPTYDVQGRITADVPSSGTIPSIDVRENIFRAAKPITDFAVNEYVKEKKLEADNKAYQLLSDMYIDQKDANGNTIQEGLFSIQSTTKKNGNPTDAALYHDNSVNSLYNYFKNNKFNNIDSFTKKAIEKKFFSTAGILKTKALEGSRIEQITLSKDIDEDYISKEALVLKDVGPVYIDIYTQKVIDKINSNSNYDEGQKKILIKAYNQFGVTTLAESMATAQPFAFKEAVEAGKFDLLSAEQKITLSATADKNILQSKFQVLTGSLDLPPDAAPALLSRAYDEIAKGTFGNNQELKNLYNTLSQTEKIEFKSFFNKKARSKRTDMQFSILAQNQIIQAETAQESKKLIENMDKETGVFDQQIEELFGNTPVIIEQFKDLNEKIINNKGKSISSFDTNSRIINLIVNDEVNQVTDKFLLPGETGEGKSIIERYENGVNLKDLTFLSSMIDSQNKNPETYSQMKSFFEFIDYYKMPVQGSPVLVGIDSGLDDRLNNFKYIMYQRYINGIQSGVPAKTLTDPTKKEFIGKDVLNFMPNANKIFKEMIDQIKKNKSFDLKTDAKRLPGESTQDYLKRIGLTK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181418_1007680

Overview

Ecosystem & Geography

Associated Families

Sequences