NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181421_1001205

Scaffold Ga0181421_1001205


Overview

Basic Information
Taxon OID3300017741 Open in IMG/M
Scaffold IDGa0181421_1001205 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7764
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015100Metagenome / Metatranscriptome257N
F057745Metagenome136N
F101069Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0181421_100120510F101069GGAMSKQDNDSKHTTKMKTINIKLTDEQHCMIKRIAKGDKRKVSDLIYLALSRGFEYMYDETSLHIDKVESDYTDEEKKQIAKNKKLEATKGWNDLNFKEQKERGYDYVCKVMSNYPSQNDFMPGFAESLERNVTEGL
Ga0181421_100120516F015100GGTGGVGKSDGKGREDNLEGAETNPFTEHFAWNESMGKSQGEARNAKGSDDRHRVRIISKRVRICDPDNLVGGVKYLVDSLRAADIIPEDDPKAITLEVSQEKVKTYKEEETWVEVSVHE
Ga0181421_10012055F057745AGGGGGMRVTSKLLDDKIHTLNVLLGRPLTPYKEDGSGKLIKGVHGQCIPCPGHFMLDSAYGGFRLDVMAKGGGISVVLDRTTRRELFEQINAMIKGYQLALK
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