NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181402_1032300

Scaffold Ga0181402_1032300


Overview

Basic Information
Taxon OID3300017743 Open in IMG/M
Scaffold IDGa0181402_1032300 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1456
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F011253Metagenome293Y
F060420Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0181402_10323004F001839AGGALKYFEKIDKDLLNNRALNSHEKLIYIICKSFENAPNKCRISHKYLMQRTGIKTQPTLIRCLDRLTLFGMLARKQIENGTCHYVFDKPTMQEYILHNTNKRKKISLSKNRHNRNLNAALSSPNVINMGKVIK
Ga0181402_10323005F011253N/ALAGGVPKLKDRSIDIKNIVKMIVKSKSFPYSNAVKKIKKDRKGYYQQKDIKNKQKSLSSDRFQQYLKEIQDNDNSN
Ga0181402_10323006F060420AGGAMTIPIKLTVNELDNMFQTATYVERYMPSPLNMKNKRTEMFTLIDRLWGISPDKDTYKGQDKPKIKIRLHSEQLQI
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