NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181402_1042781

Scaffold Ga0181402_1042781


Overview

Basic Information
Taxon OID3300017743 Open in IMG/M
Scaffold IDGa0181402_1042781 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1235
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000681Metagenome / Metatranscriptome939Y
F003326Metagenome / Metatranscriptome494Y

Sequences

Protein IDFamilyRBSSequence
Ga0181402_10427811F003326N/AIRYFRLNFSRYGGEVAMGTITKEQFEHWSDNDGFEEYMGKVDFDPDDANKEIPVKAQFDRPFYEYGDICHLSGPEWAESQTMYIEEVDKDGEPMNDGEGGYVADIQHDFGDLESLGALIKCTETHNSGSKSCKDHYYVFGQYFNKGGWHTPDIIKTGPDGIEIDKLTIEYTDADGFKVFNEIEYDGEVYYLEEDSTGKSSSFYVMEGDDV
Ga0181402_10427812F000681AGGAGMYKRDQHYNEKISTENLYKELDTHYNGETDLVRNLMSMSITEGIVETRHELGCANEELWSLNDWPEDQGFQSSDRAEYIRRITETVASERKFLQLEDELVQINKLTECPKNDDVRAYMIMNEKLRQGLTQEGQ
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