NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181397_1012197

Scaffold Ga0181397_1012197


Overview

Basic Information
Taxon OID3300017744 Open in IMG/M
Scaffold IDGa0181397_1012197 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2622
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076031Metagenome118N
F087880Metagenome110N
F097152Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181397_10121971F076031N/AMNDKSQNNTLIDMWYPSRMDIENCPLDYFVIKYIHGLEPEQMPPPNAKMRSGSTVESCVADILQGEPEQEARQHWQHVLDQHFPIHDKDEHQKNVCIGQFQDVVTNLLAAFREINKDPTDFQELVKGEGKGIDVPMGGFVDVTAKDSIIEIKTQWSTATGLFNKDGS
Ga0181397_10121972F087880GGAGMMENNVNVLDMEKEQLKQVIKNLAKKNNMTASDLATQAGVAPSTITGFLNDVPGRGHYGLSARTQGKISDAFPEFREQIETPQVIASTFSVPIIGMWDADYRVNGLQLGMPSSFLTSWSNEMDNYSAVIRSPNFFSKVNLNTENRFYLFKNVYADSLTETENKQVYATTEHGNFIGYQIKDKDAYYLNDFFDKRIEIAGKVLKASKIEWTRQV
Ga0181397_10121974F097152N/AMKKRCKQCREVKSIFMFARTTDSYGKIKYLTLCKACKSLNVRKKRKEKKELDFVSVYDPTEHAADAFKDDPRAEKEHDYGKVSRVATYYPKGGLND
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