NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181427_1015722

Scaffold Ga0181427_1015722


Overview

Basic Information
Taxon OID3300017745 Open in IMG/M
Scaffold IDGa0181427_1015722 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1895
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030157Metagenome / Metatranscriptome186Y
F049044Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0181427_10157221F030157N/AVDFITVDYISDVSGEITHSTASANTAGLKLAIEAIQNQGVNILGTGALGNSNTEQTYMVRADSLDTISSTTTVAAIQAAIRALNALTPDKVTATISSATAGDRDLSDTQVA
Ga0181427_10157222F049044AGGAGMAYSGSKVAGGKGNFSLNQNFEVEGVDVTALTVDFVVDVSAETGDLTTGSTTAGLQMVRHAFEHQGLRILAEGPLVDSNTQKTYLVRTDSLDSLSGTTTKAALQAYIRTLDQSSSSFPGLAADLTGATVTETKIGILTANAVS
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