NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181352_1003105

Scaffold Ga0181352_1003105


Overview

Basic Information
Taxon OID3300017747 Open in IMG/M
Scaffold IDGa0181352_1003105 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5929
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023555Metagenome / Metatranscriptome209Y
F025977Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0181352_10031052F025977N/AMKEIFLKVIEQGLTPNSFYVLYCIKEKIVPHDSVNKAIECKRLQRDAWVSESLELTDKSIIFMAEIDGYFKKSKKKTSKDLMGQNFMQNIEAYVHIFPNKKLSSGKYARVPAKNLENAFRWFFDNFNYDWETIFLATQKYVLEYESSNYQFMRNSQYFLRKQNVDKSWDSDLATYCEYLNNNPDEDNNVFSELVV
Ga0181352_10031054F023555N/AMNNNNLRKEKEREFYMQHMDTFKTIGLADPFFTIKTAFFKKGKFGKQCQFFEWELKKGEDIYIEFYENVYDGSGKNTDIVPGIEDRQLFKLKFNPFYNEEYDVTETIDADGKVDRKYLVSLGEMVAVLPSGQEISYSLYEKRKEEAKLEVPQLQKSLSLFPDFEQEFAPKVEEEISNEEIADAPLSEITIRDLAAIMLLKPVSARPWLNDLIKQKKVKYEYSTSN
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Institute for Fundamental Biomedical Research
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