NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181352_1058726

Scaffold Ga0181352_1058726


Overview

Basic Information
Taxon OID3300017747 Open in IMG/M
Scaffold IDGa0181352_1058726 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1105
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002738Metagenome / Metatranscriptome533Y
F013517Metagenome / Metatranscriptome270Y
F020161Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0181352_10587261F020161N/AMTQITQTKLQDLTVIKLYEHYAALEKSLPLLTPESQELAKAELEACALLRSEKIDRIYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPQDSNKITGRNYQFTLVKKKELTVEVSTDPEFWHTTERELYCIEETITTTKRVVLRSMSGEVLDERTEPKT
Ga0181352_10587262F013517N/AMFESLFAAVLPVMKDLLWAAAGMLLTYVLNKFQSQFN
Ga0181352_10587263F002738N/ALMIMSIDTYGLTSEQYTEFFHKNLRFAAKLYLDTCNILNSEGVGNVDFKTVLDMYQEAVYTANDDCRRYQRSNNPEALKEATVEIFGITPTREELMAEVQSVNAKVEALTDYIANLVTITTSGLKGIATTPDKVD
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