NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181392_1006487

Scaffold Ga0181392_1006487


Overview

Basic Information
Taxon OID3300017749 Open in IMG/M
Scaffold IDGa0181392_1006487 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3977
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004640Metagenome429Y
F015084Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0181392_10064874F004640N/AMATVYLPVTPRLNLTSQQRAQGISEQLYNLKLPKALHGEGHVTTQLLGLIQHPDTEQWACVGDTELAIQVHPQRDITALVSLFPQLTTEERAAMTYYISTNNVVLFQYLMPSDAEILTEEEAREAGWFGEEL
Ga0181392_10064876F015084AGAAGGMAGKVEGLDELLKQIGRIGAFPKEMARELRKSNRDIGRMAAKRVKPQIPRSGKDFKIYKGTPGPGRAPKGQGKVIKTIPNGTLRRSIGVRNSRGSRINVFIGPRKGGALRMDGYFAQWTEDGGIGGRNKTVNSESFNKIVPALARLRPAMERLMIMKYRKVFDKFKL
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