NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181392_1059007

Scaffold Ga0181392_1059007


Overview

Basic Information
Taxon OID3300017749 Open in IMG/M
Scaffold IDGa0181392_1059007 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1172
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002182Metagenome / Metatranscriptome586Y
F005467Metagenome / Metatranscriptome400Y
F019556Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0181392_10590072F002182AGGAMIYTDQEHDWLSKPTKKKKRVSNLTADGQPPKQTDLRKHDWAIKTVIEVDGKQYTVPVQV
Ga0181392_10590074F019556N/AMLVRTIVIYSLMIVCAFAFHEHTFAVWELRELLIERQLNLWELLEQLKYVTDEQRAVVYAEIEHMKSEIMAIVDQLLAHDRSQHP
Ga0181392_10590075F005467N/AQYYYVMCQRDSLTHCAYVQLDPESADILHDHLESTSDVCQVCPVAKSSIDPDLLIK
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