NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181405_1047209

Scaffold Ga0181405_1047209


Overview

Basic Information
Taxon OID3300017750 Open in IMG/M
Scaffold IDGa0181405_1047209 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1141
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000849Metagenome861Y
F004280Metagenome445Y

Sequences

Protein IDFamilyRBSSequence
Ga0181405_10472091F004280N/AMNRRSFIKGLIALASAPAIGKYVNVFKTEGAREGIEQVASQGVDFFNSVIKKVMDEGNLVNESDRIQTYKHPDRPDINVEVDLGSGSSSVYFDTDQGTKAGAELVKDIEVGPGYTELLENEEIYKTGAGGEVYKDVDEQITGGITNLEEFLRRKKGFAAGGRVGMFRGGVPKGLQAAMRAIMSKYGDDAITTADRAPQPAKTTQEEIMDF
Ga0181405_10472092F000849N/AAAQEVPGAYKAARDLGRGRIRSTLGISGALRPVLTTFGTPLITGLYEGAIGAKRLDEGETMTDILTDPVGPALGLTLMEPLSKLSGVVKNAPKRTMLEGAKNYFNLSNVGQARPGLTGQILRMGLSPRMIAGASRFLGLPGIALGAGLAGYDAYKNYQNQEGMIYNLFNRDE
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