NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181405_1061405

Scaffold Ga0181405_1061405


Overview

Basic Information
Taxon OID3300017750 Open in IMG/M
Scaffold IDGa0181405_1061405 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)978
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026402Metagenome / Metatranscriptome198Y
F050380Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0181405_10614051F050380N/ANIVMATNRTIRVQGIEDVKRGLKKLGQTSRQSRTAINKALRPAANKLARGIQSAYKREFNSNSNYKRKSGRTPTFKTIGIITARQSREPGLFVGPIVRKTTPIRIKGRDSRNLPAMQIKGNAKQDPRPDVFQATARKMESQIYVQAEKDLDRLLDKMIKQAGF
Ga0181405_10614052F026402AGCAGGMFAVIGKEIVTRLQATAAFTAANGSNKVFPVIIPQGVSYPCSTFEITNVSNFLSKGASLNSCDVSIRIACFADTYNTTYNQAKAAVEALDLYEVEYTEDSVDYIAKFRFLDLDDDYFKTPEKFYKNVNFNCLIIKK
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