NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181405_1116779

Scaffold Ga0181405_1116779


Overview

Basic Information
Taxon OID3300017750 Open in IMG/M
Scaffold IDGa0181405_1116779 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)667
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043964Metagenome / Metatranscriptome155N
F097449Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181405_11167791F043964N/AIHKEPSRARTGYRGGEYASERAAKAGVTRTLKHYAKAIEQVRERVAAGEPEYMAPMYNDYREVTEPCLNRQYVNDPATYEVMTMDEYGDPQQTDTGVCPYNGETITRTISVNQAWTHMDPLCESHWTR
Ga0181405_11167792F097449GGAMLSTKQYRTIFNTIAAELGVDWVGTWTDDVLGRGYTSQGDCLRTVTHSIGHNNPAVVQQFIKQLRASVGTEHDVRLTSYYIKATCVIHDDIWH
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