NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181407_1016049

Scaffold Ga0181407_1016049


Overview

Basic Information
Taxon OID3300017753 Open in IMG/M
Scaffold IDGa0181407_1016049 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2096
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017558Metagenome / Metatranscriptome240Y
F035490Metagenome172N

Sequences

Protein IDFamilyRBSSequence
Ga0181407_10160494F017558N/AMFFIIFKNKNNILTSYTNTIFSTEEEATDYAKRSLKRKDIWEVVRYDKENYDKYWYKT
Ga0181407_10160495F035490N/AEQEAEKILLRIGNINPKNMNVIISVPLSHAWETYSKKCKSRANEPTTSFSKTTFKEYSEHYKHIEKHCGDVDLTKVDVEYIADFIKKIDDLDFDYKKKIFHTFARIYDTQVGMAETDPFKVNVFKTATFFKKEDAPKKKKSGKIDFEEWNFDRIKTIISKIPSEPYQLMFKLMAETSCRPSEARAAQRKNFHFKRNIPVFEVTNSVDYEKELAPPKTEAGYRELEISASLKDQLIDYMNTLPEEQQCIFLNSKGKFHDLKNMITCLDKAVESLNLKLPVDRKTYFFRHWNVSYWCYQGKYTNPFDLATHMGDLDLKFINTNYIKKYATSKDSVKYSDHQTSNYNWN
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