NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1001264

Scaffold Ga0181344_1001264


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1001264 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9383
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028146Metagenome192N
F051072Metagenome144Y
F081254Metagenome114N
F104765Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100126412F104765AGGAGGMKAAEIIAICSIMLSAGIGAGFFWGLRQGERLGRDREWMDSFFRSIKRDRDRRDKQGRFK
Ga0181344_10012646F051072GGAGGMQNNFNRHEPIKNLTGGGHSAARYTGTHGHVERSAHYCFIPGEGWVSWREIYDQFDEAFRDWQMRQALGIRGKRKPSGERT
Ga0181344_10012647F081254N/AMQNEELLTAILNELRAIRSALSNRSAPAAAPAAQLAAQAGKDIPQPSEIVADPGSVEVHFGKNKGTALRSLGAKSVEWYAQEPEPRIGNNGKPFPPRAEDVRLRNAARQLVHGQRGTLAAGTKVTLVSETLTEEVPF
Ga0181344_10012649F028146N/AMETTNEIKKAAVIAAASEQVRALLETHYDAMRKAAEESFVDDETQAEPKAKASFTIEWDALAMAPTVTVKVGWSVRFKDESESVVDPLQAKLEIGGVE
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