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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017754 Open in IMG/M |
| Scaffold ID | Ga0181344_1002307 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6782 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (8.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023555 | Metagenome / Metatranscriptome | 209 | Y |
| F025977 | Metagenome / Metatranscriptome | 199 | Y |
| F048942 | Metagenome / Metatranscriptome | 147 | Y |
| F071153 | Metagenome / Metatranscriptome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181344_10023072 | F071153 | AGG | MFSGKFVKKNGKLTYASPQDKLAYEIFVEKIPEGQKVDMYLDLANADHSKAQLAKVHACIREMSKESGYTFDEMKDIIKNASGLEGKSFAECSKDELMLAIEACIQLGKENYNINLG |
| Ga0181344_10023073 | F048942 | N/A | MIKAKELKEDALIDVRVNKSYYMMAKAASFTILQNMNITEKGDDYFKEIMTKKYEELDEMQRAFYTIVLLLAEIEKQATSTNQFTEKEILEPGDEGYVAPTLD |
| Ga0181344_10023075 | F025977 | N/A | MTEIFTKMIQHGLSPNTFYVLYCIKEKIVPHKFVNKELECKRLQNDHWLTEDLELTDKSIIFTTEIDGYFKKSKKKTSKDLMGHNFMQNIEAYVHIFPNRKLSSGKYARVPAKNLENAFRWFFDTYNYDWETIFLATQKYVLEYESKNYDFMRTAQYFLRKQNGIDKTWESDLATYCEFLKDNPDDDNNVFSELIV |
| Ga0181344_10023077 | F023555 | N/A | MNRKEKEREFYMQHMDTFKAIGLADPFFTIKTAFFKKGKFGKQSQFFEWELKKGEDIYIEFYENVYDGSGKNTNIVPGLEERQLFKLKYNPFYHEEYDVTETVEADGKVDRKYLVPINEMVAVLPSGQEISYALYEKRKEDAKLEIPQLQKSLSIFPDFEEEFAPKPVAEPGLQNTEIADAPLSEMTILDFAAIMLMKPVSARPWLNDLIKQTKSEI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |