Scaffold Ga0181344

Basic Information
Taxon OID	3300017754 Open in IMG/M
Scaffold ID	Ga0181344_1002749 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017754 Open in IMG/M

Scaffold ID

Ga0181344_1002749 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6180
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6180

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (80.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.2382	Long. (^o)	-86.2805	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.2382

Long. (^o)

-86.2805

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F031403	Metagenome / Metatranscriptome	182	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100274910	F099270	AGG	MNTNFQYAQAPNRKGNMSKHTPSHDGGCTNVVGPKHGVATPKGNQGAPAANGNITGRHQKVMVSTHADYCGTIKNDGYMNKSVKNY
Ga0181344_100274912	F001059	AGG	MATYDIEALKADLPTAKELAQFVYDKTQISLDFIGKPKEDQYQVAKNALEGKKVPSDYMTELNPYLDKKELIPEDAIKQLPPRSADLPPEDARVHFFGATNMPHPTDPQSDRKVQINFRKYENGAITYQITGPLEKTAIGERINKFGQKQPEKYSWLDPRTPEIMMRRADGTYTEKGRGLYAYCIGEKGGGIWPLIDRDLTNFAQKNVTDPWA
Ga0181344_100274913	F006264	N/A	MIEEPTNLFRQKLPAQAEVCARKALEWLQKDLQHEHSLSPQDVYYLASAAEILLGIRDTYGKK
Ga0181344_100274915	F031403	AGGA	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIPVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMD
Ga0181344_10027495	F001915	AGGAG	MEWKLAHPMYDVADIVWMSDTFFGTEADGILKRDKAVFTKSVTIAATVQLFDKHREFIAVCRTPDERLLGFCWFDRGGYTTYANEEISNAKFHHVDLSLPAKTRVQLVHQMIDQHILWANVCGIPVICSTSIRSENNGFMKIHKKRGFTVNGSYAWIRTEEGMKCLMK
Ga0181344_10027496	F012670	GAGG	MFDEIRPEGSVVSSEGKKADARARYAQKKAMKLATGELIPEIKASHNPAGRPKSIVNRVTEYGALFNKLNEERLAKGLSPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVQNISKEEEVSADEALDDFLMAIRKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181344_1002749

Overview

Ecosystem & Geography

Associated Families

Sequences