NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1005820

Scaffold Ga0181344_1005820


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1005820 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4124
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005529Metagenome / Metatranscriptome397Y
F042328Metagenome158Y
F065775Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_10058203F065775N/AMSNFQLNFNSPKKVVSITLDEEEGIFQLAYLFKKLLDDAGIANKVEEKEVEVVEATEENS
Ga0181344_10058204F042328N/AMDNKPKTKLGNGKKRSESWITASLCLSDAEAHAYTYNGKKYVNLNINIYDKPNEYGKDVAINLNDYKKEEGAKPQANKMPTAPVPYQAEEYDLPF
Ga0181344_10058208F005529N/AMPRMLPKSKLDYSLEIRYRISSCEWSKWMNKGKGSFQNIELVQQQIRLLAASYKGRDKEIRFEWNGWLCDYSGLPTGEVISLK
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