NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1136734

Scaffold Ga0181344_1136734


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1136734 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)702
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001538Metagenome / Metatranscriptome674Y
F002099Metagenome / Metatranscriptome593Y
F046906Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_11367341F046906N/AMFMYDQKTNSQNKETSDRSKRKINNVGDADGKRNPVHLCFGYGRQLYAWPLGQRSGQRRDIQNDFTRFF
Ga0181344_11367342F001538GAGGMIDTIKLFPTVQPSGYPDRHDLAQVKLEKQHEMNKANELAKQKQVQLQDLEFEIYTKKVDQERLRMEIFTNRKLDVYV
Ga0181344_11367343F002099N/AALALTLSLQSTGKDLCSVREFYSIAWGVHDPTERYKQMAEWLTKHQYLCKSTDFKVIWNNLSEWAGNADSHQLRGLVVLGYKEALEREKK

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