NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1179225

Scaffold Ga0181344_1179225


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1179225 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)599
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006587Metagenome369Y
F012016Metagenome284Y
F066489Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_11792251F012016N/AKQPYAWSTEEFNINGELVWSSITQFRPKELSWIRDLPNKKHYVTITPLYKCEEKAEKITGVKSYRESTQRLTDAYNGL
Ga0181344_11792252F066489N/AMAFNMGCVSLATSVATQAGVQVVGEQYLISQNKPIIRCNLINVAQGKKMCRIYRQYRKA
Ga0181344_11792253F006587AGGAMDKKYEGTGYIIVGFILGALLTWAIMQSIDMRKKHKTNLKCIQGELYEEVRTNMFVKSHLECFE
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