NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181382_1006299

Scaffold Ga0181382_1006299


Overview

Basic Information
Taxon OID3300017756 Open in IMG/M
Scaffold IDGa0181382_1006299 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4352
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020903Metagenome / Metatranscriptome221N
F080238Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0181382_10062992F020903N/AMADQLDIFGFDADQLEEVKIDNPTTLSQVFNNIAADMVYCLQQSVRKEGLVYKGNLEQSIRMPVKMFGFKMVATLYLADYYDYLNQGVKGIGGSRKYKKGVKLKIPEPWVIKAPNSPYQFKKGPSVSHVRQWAKSKGLNEYAVRNSIARTGIRPRYFFDNCMQETFYGEAFNKFKTDIRLVSGERIAKGLKEISKK
Ga0181382_10062994F080238GAGMEEKLTEFEKMLKELENKAVPKRTCNIDDENCESCSG
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