NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181420_1046449

Scaffold Ga0181420_1046449


Overview

Basic Information
Taxon OID3300017757 Open in IMG/M
Scaffold IDGa0181420_1046449 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1400
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003169Metagenome / Metatranscriptome504Y
F003920Metagenome / Metatranscriptome462Y
F018084Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0181420_10464491F003920AGGAMLVRTVILYCIMTVCAVAFHENTFAVWELKEDLQIRIMNLWELFQQLEYVEPDQRHIVYQEIDHIRSEIQRI
Ga0181420_10464492F018084GGAMNTALVIIALLVCPGIIMGIVSSYRAGQKPHRGLYLMIKKFAHRK
Ga0181420_10464493F003169GAGGMIENLFQIGHGRIAHYEHGGKTGRAMIKYPLYKKNNSRKNTLVYPGLTTVSLDRIITYMQYYYVLAYMGKHCHRHCVQLDPESADILHDVLVSRYDLVQVCPVTQSAVEPHQRDIVYEEIQHIRQEIQRIVDELIQHDQQQHQ
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