NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181408_1006090

Scaffold Ga0181408_1006090


Overview

Basic Information
Taxon OID3300017760 Open in IMG/M
Scaffold IDGa0181408_1006090 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3486
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016661Metagenome245Y
F065668Metagenome127N
F079927Metagenome115N
F097118Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181408_10060904F097118GAGGMIKFPSGLKFGNGEDSLVNSLFTSDTTNDGWYTVTGRKNKTMRFFAGNGKPLFYIVSNKHGITSGNLTNSGEKFYYMAGTSSLTSKKLGLDKLDYTTEKTLITNIIEAA
Ga0181408_10060905F016661GAGGMNYTAERYLALKQFEREQKRDKWRTILWNVSVTGIFAMVLIQIAGVL
Ga0181408_10060906F065668GGGGGMLYTIWVGGVEVTPFLTNREEAYRIASNWRNDGYNDVIVERFKPYEYHS
Ga0181408_10060908F079927GAGGMSKDYREQAQLEDEADEKYLTMYQYYKELTDYERGEYDALHSYPFDESEEANKEYTEGYRTGYEYAQRMGAKDNE
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