NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181408_1021900

Scaffold Ga0181408_1021900


Overview

Basic Information
Taxon OID3300017760 Open in IMG/M
Scaffold IDGa0181408_1021900 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1763
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007985Metagenome / Metatranscriptome341Y
F097119Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181408_10219001F007985AGGAMQQYKVNDKVFNNIEEATVYVTTLNKAVTIQPYTPPTQASIKFNVARNMLLREMIEWAGEFVQSMSPSTDVCWMYSVEDDTGFNDAGDTYYEDCTGLSFGTNLMWEDAKHDYEGASANFDCLLGSYNEFTTVDSLSEMLNSMYHTMSDHSSETDSYIGEVRHSIKQLCANNPNIAHSYEERTRTTTISFVGNVDKMYEEFMQKFNS
Ga0181408_10219002F097119AGGAGMQNKLISNREMFRQLLARDITAILEDVNAGTWVDMTYLRRNLGMTNSARHYTNLHTAQGHCFTSFGDRFYRNMQSINDAGYGITIRKDKQTNKLFVFNTKFADNYVEAIADTFEDWTTCYKSNRGYEINIAKDEVA
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