NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181356_1160120

Scaffold Ga0181356_1160120


Overview

Basic Information
Taxon OID3300017761 Open in IMG/M
Scaffold IDGa0181356_1160120 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)691
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011756Metagenome / Metatranscriptome287Y
F029021Metagenome189Y
F075658Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0181356_11601201F029021N/ASGRTLNRIGGRGMNLCQFCGWEIARPDWYHRYNGKMICDNCVMDTMSEREKEKAND
Ga0181356_11601203F011756AGAAGMAEPRYLEGDEYALNGGYEELVDCKECEKEFDQVEYRSDTCSGCEDKQVKREKEKV
Ga0181356_11601204F075658AGGAGMSNVVELRNGSLKRVIFYEVADQQNIAMWGGESALEALKWFRSSPNGSRIYVQEWLTDEEDAKQV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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