NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181422_1026094

Scaffold Ga0181422_1026094


Overview

Basic Information
Taxon OID3300017762 Open in IMG/M
Scaffold IDGa0181422_1026094 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1912
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → unclassified Puniceicoccaceae → Puniceicoccaceae bacterium TMED149(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039123Metagenome164N
F070064Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0181422_10260941F039123GGAMDKHDFTALYEQWFALHPFKKRDWVELGKVHYQAFSRESVALMIEALGQLTEEIDNFPSPKQIRAKLNQLSSSKTEGGEVKTNVTSHDETLATRLCEHLYGITYNGKAVK
Ga0181422_10260945F070064N/ADELVPTPISQVVDNIRNCDLPRNSVERHEYLKTQLKELMDGIKTNLD

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