NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181410_1000476

Scaffold Ga0181410_1000476


Overview

Basic Information
Taxon OID3300017763 Open in IMG/M
Scaffold IDGa0181410_1000476 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17908
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (88.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045425Metagenome153N
F080627Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0181410_100047619F080627AGGVTYATALTAAIARLTTGTGLVECRSPNGLLGAGAPRGHRSVACLPAGDRKQRSREAARADGLRVTARFTVQLGHELKPGAGLAAPSQALQDLHTAQRYLIQPGTSLTTEGALTFGPVTTTRLQGGAFMVQSFELGVTFNLDMSAP
Ga0181410_100047620F045425N/AMADGTPYSARWTGPVLIPQGQDTTITVAVEHSGSAPTVSAVTFSLWDSGGTVLLDAVSASESGGTLSYTVTAATTSGKTLGQGFLLKFTATIGGDAHDFYNDAALTLARLYPPIGTTDLTNRYSRLAALQTTGASDLQKFVSDAWTELSSRLYAEALPFWRMRTPSALRPWLTAQALVYALDDLALTLGDGGPYRDEARRLEQTLPRLYGQIRSRMDDGEDNTIGEQQQPASPVLVLSSGRLGRFTR
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