NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181385_1020535

Scaffold Ga0181385_1020535


Overview

Basic Information
Taxon OID3300017764 Open in IMG/M
Scaffold IDGa0181385_1020535 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2116
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045425Metagenome153N
F070658Metagenome123N
F080627Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0181385_10205352F070658N/AMSVDLDIELRSVTRHLRREHGSLRSLSAGELVVLIAGGQSILVQLRNNWPVVTGRSRAGWDVAPVTRGFIGYKVRNNVDYSQFVHRRGEGPDPLWEEQMIIIRDVILPPIVERLNMTITETERYSQPAPEPQRPLFLSTPRQQTIGLLSQVRRLRRLVRRR
Ga0181385_10205353F080627N/AMTYATALTAAIARLVAAGLVECRSPNGLLGAGAPRGHRSVACLPAGDRKQRSREAARVDGLRVTARYTIQLGHELKPGAGLAAPAQALQDLHSAQRYLIQPGTSLTNEGALTFGPVTTTRLQGGAYMIQSFELGITFNLDMSAP
Ga0181385_10205354F045425N/AVADGTPYSARWTGPTLITKSHDTTVTVDIEHGGSTPTVSAVSFSLYSPSGEAIVDGATASESGGTLSYTVTAASMSSQAYAQGWAVKFSATIAGDVHDFYNDGALCLARLYCPIGTTDLTNRYSRLAALQTTGASDLQKFITDAWTELTARLYSEALPFWRMRTPSSLRPWLIAQAAVFALDDLALTLGDGGPYREEARRIEESLPRLYNKIRSLMDTDEDNNLDEAHQPASAVIQISSGRIGRYRS
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