NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181385_1023348

Scaffold Ga0181385_1023348


Overview

Basic Information
Taxon OID3300017764 Open in IMG/M
Scaffold IDGa0181385_1023348 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1973
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034211Metagenome175N
F041168Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0181385_10233484F041168GGAGGMKRAKVRRRTVGFFRHDADVPFINLSMFETIKDATGIPHYWRDSDGDVSQFWHAGTIPKGTGVMCAHRERGMKHTFWTVTDPESELVGKMFIIGHTFKDRREVADERFEYSNISPTLKYSILSEKP
Ga0181385_10233486F034211AGGAGGMAYLKKDDLVIIPSEGGANIQARVVDMQFRRFRRTWKDKATGENKSRWKSVPYAVCECFLGAPIGTEFVIPGYKLKNETKDGEKLLVLRNEYAAEFGGHWIDKMIEDSRAKREVAQ
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