NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181385_1090056

Scaffold Ga0181385_1090056


Overview

Basic Information
Taxon OID3300017764 Open in IMG/M
Scaffold IDGa0181385_1090056 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)941
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004629Metagenome430Y
F011253Metagenome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0181385_10900561F011253GAGGLNKKLEIDKIIKNFAKNKSLPYSAAITKIKKDRKGYYQQKDIKNKQKTLSTDRFQQYLKDIQENDTD
Ga0181385_10900562F004629AGGAMIPTKLTVDQLDNYFQTATYVERYMPSPLNIKNKRTEMFYIIEKLYGIGKDKDCYKGQDKPRMKIRLNGEQLQIYEFCLLLLLKAEEKDRDIIQLRNFPHKRSFRQLKRFFLPISHEQCRIKYYNALYDLLKLYHLKGRAYFLK
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