NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181343_1000156

Scaffold Ga0181343_1000156


Overview

Basic Information
Taxon OID3300017766 Open in IMG/M
Scaffold IDGa0181343_1000156 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32995
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (76.19%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001841Metagenome / Metatranscriptome627Y
F006785Metagenome / Metatranscriptome364Y
F009141Metagenome / Metatranscriptome322Y
F021513Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0181343_100015626F006785GGAGGVSGGEWTTKGRQRESREAEREQLRLEKRHLRDLRWAVERSTLEASDWADLLALQAAHGKEGPLQVWRELVPYWRACQQLNGGADIPAELFPQATGLFPRTPEPVKAPANRAKATPGAPRKRRSDAGKRQAARKEAA
Ga0181343_100015632F001841GGAMGHFTPPNFFLGLMRVAAWAFWRDPVKPEPPQPKRPRKPTLGYTVGDIPYELMAVVRVSWYRKGMAYEVEEYQIEESDDAEKQFRYVVGTALKQGADVCVLTQYQPEALGVQQ
Ga0181343_100015636F009141GAGMPGSKSVAATTSAELDPTRMTETAMVPFYRSYLLGGKMVYLDKLSELSDSELNMLNIETMASLEEARRDYEAVENKQSEEGGSVYRRLKVAGYFQAAIKLEIQN
Ga0181343_100015637F021513N/AMSMYVLSESQFDQITKALEAARFALETSQHVQLDLTKPKQTIPLLAGEKLVRTSDVQKVKSQSKTRKSSRKGQRGVAVLTEPKVLEIKRQLAAGGKTVGAIAREFGVHMTTINCIKWGKTWKHVQIQQPTPVVVAD
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