Scaffold Ga0181343

Basic Information
Taxon OID	3300017766 Open in IMG/M
Scaffold ID	Ga0181343_1000164 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017766 Open in IMG/M

Scaffold ID

Ga0181343_1000164 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32154
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (31.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

32154

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (31.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.2382	Long. (^o)	-86.2805	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.2382

Long. (^o)

-86.2805

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021297	Metagenome / Metatranscriptome	219	Y
F024551	Metagenome	205	Y
F026860	Metagenome	196	Y
F074557	Metagenome / Metatranscriptome	119	Y
F097349	Metagenome / Metatranscriptome	104	Y
F101160	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181343_100016413	F101160	GGA	MTTPYNPRSGIGELHDLIDKFVPVREAALQEHYMKAAETRALLKSLGCWPTDKRKPVEPRGKKPKAGKLASELGREAYHWAHANNATYTEAAERFRIDANSIHSYRQYRKLPKLRTK
Ga0181343_100016417	F074557	AGG	MTLVLALSAALLTSEAIPEQTLQAVEQVESSGRGASTPRGDGGKALGCLQWHAVAWKDCSAIRRKVGLAVYPYADAAVPAKARDYARTWLTVLKVRLAGEIGRQPYPGEIWLAWNLGWSGYARYGFSWAYVPRVKFDKARQVNTLAWGLPKRPAVAR
Ga0181343_100016418	F026860	N/A	MTDSNSIVQRLLKELSNEPKDYPCPKGWFTVEQIRVELDMAHTRNASSRALDLQRRGLLERQPHQFKSGTGQCHMAYVYRPVPPYKSIKEAAAQMFAHRSDKVPKGWVRLVDYAVSKNVSDVAVRGRVARAGLKPKYWKTPRGIIGLHLNAYYLKADLDRLYKA
Ga0181343_100016432	F021297	N/A	MSDTVTLSQGNTFACTFVWTPGTTGPANLLATTLTSTVEDKCGNSYELTITKAGDGLSFTCTYPGSTADWALGLGRWDIKFVFPGSPGPISRTEVFRIQVIDSVTV
Ga0181343_10001647	F097349	N/A	MKPKNIDDAGRLEACKELIIEHRKKAGARATYELYGILFGKKVELDRVDHAPTSADFAGMIGKKRIASLFTAYDMVVEFRGNWKTDAEAKVVAWEAAQ
Ga0181343_10001649	F024551	N/A	MLIIRPDSLPRLWWLFPWSMARQLHKNAVAIREMADNQSTTITNQAKILGRYMDENRELKAEVTRLAHSREHWIAKHDRAYAVAMHNERVILEMENRSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181343_1000164

Overview

Ecosystem & Geography

Associated Families

Sequences