NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181343_1116085

Scaffold Ga0181343_1116085


Overview

Basic Information
Taxon OID3300017766 Open in IMG/M
Scaffold IDGa0181343_1116085 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)754
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029678Metagenome187Y
F037608Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0181343_11160851F029678N/AKRRRSVMSAERFTRRISMNKVRGFNIYNSETGKKLATLPLTIPIGSTVEAYERDGYKVRWSWEEGDNE
Ga0181343_11160852F037608AGGAGGMSNVIAFHPPKSSLILLYEVVDDWGNAEWGGERPEEALTWIAHSRTASRILVSGWESDEEDAQMVGQPLDVTDLVKAASR

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