Scaffold Ga0187217_1035919

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0187217_1035919

Scaffold Ga0187217_1035919

Overview

Basic Information
Taxon OID	3300017770 Open in IMG/M
Scaffold ID	Ga0187217_1035919 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1748
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074736	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187217_10359191	F074736	GAG	MFDKVMRGGSFTYTASGTTWSSNGPWEYAGGNTNILYTQDEIDIGGMTTTQEETFYPEAATIQNSPFYTVPGVVQRDPGDPTAGYVPYGALFEYVLITESPFKVDKWVADQTYTGDGTSWIPVYSCPGIDPRRTTDQATTLGFENILYGRVQMIVHNSSLPQQAGVVYSTNEFGSMTPTASDRLYVTRFVVIQPLGGQSIPNGSGIQLPHMRVVLVGSGKEENDLSYIMRLRNSYLLQQDVN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.