Scaffold Ga0187217_1057221

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187217_1057221

Scaffold Ga0187217_1057221

Overview

Basic Information
Taxon OID	3300017770 Open in IMG/M
Scaffold ID	Ga0187217_1057221 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1352
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039087	Metagenome / Metatranscriptome	164	N
F053969	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187217_10572212	F053969	AGGAG	MQNTTTTDTLTQTEKAFLLCFLTNTFAGLTQNNADSLLEALEPAEAEYFAESYFVRLQDAQEVLEHLNTLYNTAEQEPARFTFTIEQAAAAIVSYDTEYRETIIEQLEYACTEDLQRLYAEFADIACKQTNFATLVERLCNNY
Ga0187217_10572213	F039087	GAGG	MQNTNTKTARQIVRSILKANNVKYSSHSYTNKSANSNLRNLCFLTLNLTDEVLEHIALNLNVAKVHATKPKFYNVHPNARYLR

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