NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187217_1146360

Scaffold Ga0187217_1146360


Overview

Basic Information
Taxon OID3300017770 Open in IMG/M
Scaffold IDGa0187217_1146360 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)792
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F090883Metagenome / Metatranscriptome108Y
F092702Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0187217_11463601F000720GAGGMILQEDKIMRHEIPNRMMSTTFTLPIDNRKVIGIVNYTAGSEGITPLAFWVKIKPTDSYIDRELRASGKLISRCLQHGEDLKELAETLSQDNIIGQMVNYFNKNVEEIIMGIKSDKKQRMLSTDPYASQMKE
Ga0187217_11463602F092702N/AMVVNFRYIDKLNITIDTMWHEIEQVKDTNISLYQFIEEHGDDITGR
Ga0187217_11463603F090883N/AIRMVTIAIRMKRINNCRDMLSKAACPRMRKMWKRNYEKLLKNYWEEQGERILNAAGQIH
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