NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181425_1010141

Scaffold Ga0181425_1010141


Overview

Basic Information
Taxon OID3300017771 Open in IMG/M
Scaffold IDGa0181425_1010141 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3153
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019754Metagenome228Y
F020110Metagenome226N
F022313Metagenome215Y
F023484Metagenome210N
F098218Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181425_10101412F019754N/AMLPNELEPAWPPSDDDIDAMELDAYDRQKLQDLIDHELFMDEMAGVPTPQELNPNLK
Ga0181425_10101414F020110N/AMSTQQEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDITASQAEIDLSEDGPSLEESSEPINTNSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYNTQSASPFA
Ga0181425_10101415F023484N/AMGTTPNPLHLLLNAPMNINTKTGELLIATLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNEWGRDQSLDADQVAKCKTFIRNHS
Ga0181425_10101416F022313N/AMTYHYKPEQEYESTKLERILKELQSIIKRDNKRHMMDQHLTHSMRDLLEYEIIPLLEAEVDYDPTPDTAYDFFHQ
Ga0181425_10101419F098218GAGMVMTSFSSWSKRPEEMRAAAKTRAIAALHQKHSKGLTTLERAYLHALKTGRLDLDD
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