NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181425_1037713

Scaffold Ga0181425_1037713


Overview

Basic Information
Taxon OID3300017771 Open in IMG/M
Scaffold IDGa0181425_1037713 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1586
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007985Metagenome / Metatranscriptome341Y
F044531Metagenome / Metatranscriptome154Y
F045787Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0181425_10377131F044531GGAGMQKVFNNIRVDNNTHITDGDIELTTAQVGKGFWLCGFDRAGSCFEMTKISRARAKECLFDYGTYSLKDCDITDFDCATYYWHEEMADGGILR
Ga0181425_10377132F007985GGAGMQQQYKVNNTIFKNLEEATAHVATLNKAVTIEPYTPPSAESKKLNVVRNMLVREMLEWAGSFVHHMSPSTDVSWMYSFEDADGNSDAGDCYYEDCTDVTFGNNLMWADACDDYQSAVDNFDSLLGDYNSYNTEDKLSDMLNNMYHTMSDHSSETDDYIGCVRDSIEKMCANNPNIAHSYHHPSRRTTISFSGNVNSMYKAYMLDRNS
Ga0181425_10377133F045787N/AGSKVVIEAVDYYLWRIDLPLGKIDCGTYEGKHWGDAVIEDTDAWLTFTVGNLYAKNKFSIGEGIVDINYAEGNQGLAYTGDLEDVVTQRIKDLYNLKADGSEQGMQGDDYISLDIWMDGLGDLELTDEQMDADDDDTVSENYLKQFCRFENYPGVTNGDLRQAVLAS
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