NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181430_1024238

Scaffold Ga0181430_1024238


Overview

Basic Information
Taxon OID3300017772 Open in IMG/M
Scaffold IDGa0181430_1024238 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1976
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002593Metagenome / Metatranscriptome545Y
F024924Metagenome204N

Sequences

Protein IDFamilyRBSSequence
Ga0181430_10242381F024924GGAGMKKRLSKSDRALAQNKFDQVKQAKNRIIVSFNDEEKAKRYLRSKGYRYQEVYSFKEDRAMLYKNFKNSWVKLASKFDYLNDNTLEMGTVWNIEQI
Ga0181430_10242383F002593GGAGMSKLIYSRNGSETTESIDNAQPQIRAIWNQAHRFGANIVRVRAEKNRFGADTGRTFNSFHHGKVSVYKQKDQVHESNALYFARKIPLTKVNKGMQILEVASSLDVQDTLDTVDAIQYYSETSFLGRLWNRIRYGTPMSITS
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