Scaffold Ga0181386_1004501

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181386_1004501

Scaffold Ga0181386_1004501

Overview

Basic Information
Taxon OID	3300017773 Open in IMG/M
Scaffold ID	Ga0181386_1004501 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4958
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038473	Metagenome	166	N
F044465	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181386_10045012	F038473	AGGAG	MDLGFEIEIEYPKEMIQTSPLPPGEHMVEVLYIGSKPTRSGGWMLNMKLGNDDGHVWDNFNIGHASESTRQSAQKKLARVARCSGLEGSFSNTDDLLNRSVAVELGTNHNGYIEVLKYKEKKSLVTPTVTDDDDDVPEL
Ga0181386_10045016	F044465	GGAG	MKNMDRVEQEMKGPNYMENVMVMETLRSTDMSLVPESFHGKSWDDEELLEAFQLAQAQIHSKNYRLASSILVFCHRLLKERCE

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