NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181386_1032134

Scaffold Ga0181386_1032134


Overview

Basic Information
Taxon OID3300017773 Open in IMG/M
Scaffold IDGa0181386_1032134 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1723
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046625Metagenome151Y
F069319Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0181386_10321342F046625N/AMMYENFIIDNFLSETELNSFTYNNKEEFKSSTGNLTLYYQKLLTSISVKISKHIGKFSVRDAHIYDLKQPYRLHCDSGKTKTFYYTIIVPLDKQPQGGIFVMDQWADTTYSLDEYYTQDWQSVLSFEERKEKIKKFDSNISLPDSLDFKHIKDKRGFNVKEYFKYNYNQAIMFPSKFFHCSQNIENFTNKKSLAVFTDVR
Ga0181386_10321343F069319GGCGGMLDSYTFKPSELPKIYRVQIRDIIKDVVDSKTDMYWKNYTKFNIDEQTAISVSCIDHKVKVISTIYHREFFGEGVYRLWNRFLYSKDFRETGGSKKRDGVHINHPVLEQQIDFVEKLNPKFYFISRQRKNTRWLKYYFDTFNKEYNRNLVVNDNQYWVCNGDKEGCVQTIIYPKNMKVSLKQYK
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