NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181386_1040840

Scaffold Ga0181386_1040840


Overview

Basic Information
Taxon OID3300017773 Open in IMG/M
Scaffold IDGa0181386_1040840 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1509
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028000Metagenome / Metatranscriptome193Y
F054351Metagenome / Metatranscriptome140Y
F097118Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181386_10408401F028000AGGMATIKTKYGYSVDCYGDCDEYATIEACFDDELFDGCVDGSYNNWREAVKELSEYAHNNGTELVQLESDS
Ga0181386_10408403F054351AGGMTKHTYYIVDADGYILLTVESQNTMRDFDAEAKISISPLLPVIANQYGLDAVYYTK
Ga0181386_10408404F097118GAGGMIKFPSGLKFGNGEDSLVESLFTGDTTNDGWYTVTGRKYKAMRFFTGNGKPLFYIVSNKHGITSGNLTSNDNKFYYMAGTCSLTSKKLGLDELDYTTEKTLITDIIEAV
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