NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1000703

Scaffold Ga0181432_1000703


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1000703 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7121
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005934Metagenome / Metatranscriptome386Y
F079232Metagenome116N
F084740Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10007032F084740N/AMFRLTVHVTDVPRAEVRTGRKIKSANGKWIEEVKQKIHNVLSYECRTRDEIAKKLGEIRGKYTILKGIAGQHKVSKVDKEFIQISNIK
Ga0181432_10007035F005934N/AMIDKKYYIDKGFELYAVMTSSDKYTQGIDILYLSTPIKSDNQPAVYILTDKSGKLLKIGETQNLTSRFYKAYRCISNTTNNRIRKFIKEREDIWVYVLPLPIVTEKILGYKCGTSYVKGLEYHLLKEYKDRYQKVPPLNSILS
Ga0181432_10007037F079232GAGMLKAKRSKKTKEFMYGIEITKPWSKEMYAHNERTEDHLKDQIKTAFEKTYTNMAIPMDEDNLRDMANEIAGYKYGEGFSLQDIVEEVLKELDHMPGFQLHETMYYLHHKGYVKTQAMGLIGYQPDPHLVPYWEVK
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