NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1002809

Scaffold Ga0181432_1002809


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1002809 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3891
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002426Metagenome560Y
F005319Metagenome405Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10028095F002426AGGAGMSGLQTRTYTLAGQSFTAGTFVNLSSLMGSSQSTTNPEGMSKVVRISLSCTPQQDSATDGISIFKFAGDGVSVQQIFSGPGWSNQAAGPLGGNDGQPVVMENSNGLFDIISGNQIDFSASVTTAETCDVSISITYSA
Ga0181432_10028098F005319AGGAGMTDELFYLFALTSFILYFIIYTYWVPLRTQMRIEEWLRSTESDETLLLSMEPITAKIREQMLVDYEEFMLPQARENLKKFWAGAMSAASKEIGSSEEGTQLSLIHSMTKELSSQPWYIQAAASKLLPAITKAAQEGGKTKSALKEINSFGFK

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