NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1004524

Scaffold Ga0181432_1004524


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1004524 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3173
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016735Metagenome245Y
F042083Metagenome159Y
F074128Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10045241F074128N/AEGKRLTWRTNCHVVRVTIVDLFTNNAENFVEDWYECTWTISCREDGNIWVEA
Ga0181432_10045243F016735GGAMTDQDFFLVWFLSFGLYLIIYTWWIPIRTRKNIEAWLMSEESDETLLASLGVITSKIREQALVDFEEFMLPQARDSLKNFWNGAMGNAAQELAKTDEGSQISILHSMASELKDQPWYVQAAASKLIPMLNQAAATQGDATSTAVKGLGIAK
Ga0181432_10045248F042083AGAAGGMPHPSVTGLASGLAVATYLNQGTASRGAQGVIESLTKGNLNLAFQDISKNAINLATSTDGKKVLSTAIVLATAGGLARKWFPSVKLGGSKLYFKI
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