NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181357_1010108

Scaffold Ga0181357_1010108


Overview

Basic Information
Taxon OID3300017777 Open in IMG/M
Scaffold IDGa0181357_1010108 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3762
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)108
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018529Metagenome / Metatranscriptome234Y
F023790Metagenome208N
F059905Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0181357_10101083F059905N/AMKNDCKNAIRYLVSKTYETYAKYKNSISVLSLPGESWEFENHILNHQDYRNCIQQIPMDLQLLCFEKSFRTYSVSNLLDKNKDNNTQYINDKVTLDHLKLLKNKNKFLWFDFCGNPSVESLQFLNSSFIQGEKTCAIFTFTLLWRKRDNLPLEIDNLSQSNTNEEAIQIYFKQALKDLNANIEGYSNKITLLWKYTYISSRAPMICLCVTNDSTLKCEPALKGQGELLKLDQEITPAAETKGDLGLGEELVCKMKTSKRSLAAHKAWVTIRANKAKAALAMAQ
Ga0181357_10101086F018529GAGMNLQEFKQIFCERGGSVFPEQINELAEFAPDLPLGVKVGYGSRFVTSAKNFKLDLENNTKYQLDVHNVDQYVRDVFVPCSAYDKVRQIFGWANKE
Ga0181357_10101087F023790N/AMKILLQSKRFETTTILEDNKTIYVVTTRGELFPDNTQSKAITFDFQRLDKKKLTKKEEKFSDDVFNHIIKDKP
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